Package: climwin 1.2.3

climwin: Climate Window Analysis

Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a given biological response. Please see van de Pol et al. (2016) <doi:10.1111/2041-210X.12590> and Bailey and van de Pol (2016) <doi:10.1371/journal.pone.0167980> for details.

Authors:Liam D. Bailey and Martijn van de Pol

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climwin.pdf |climwin.html✨
climwin/json (API)
NEWS

# Install 'climwin' in R:
install.packages('climwin', repos = c('https://liamdbailey.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/liamdbailey/climwin/issues

Datasets:
  • Chaff - Annual laying date of breeding common chaffinch (Fringilla coelebs).
  • ChaffClim - Daily climate data from 1965 to 2012.
  • Mass - Chick body mass data since 1979.
  • MassClimate - Daily climate data since 1979.
  • MassOutput - Example output dataframe from function slidingwin.
  • MassRand - Example output dataframe from function randwin.
  • Monthly_data - Monthly temperature data
  • Offspring - Reproductive success of birds since 2009.
  • OffspringClimate - Daily climate data since 2009.
  • Size - Average size of red winged fairy wren (Malurus elegans) chicks.
  • SizeClimate - Daily climate data from 2006 to 2015.

On CRAN:

20 exports 12 stars 2.71 score 46 dependencies 8 mentions 100 scripts 330 downloads

Last updated 4 years agofrom:3c28479c04. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 26 2024
R-4.5-winOKAug 26 2024
R-4.5-linuxOKAug 26 2024
R-4.4-winOKAug 26 2024
R-4.4-macOKAug 26 2024
R-4.3-winOKAug 26 2024
R-4.3-macOKAug 26 2024

Exports:autowincrosswinexploremedwinmerge_resultsplotallplotbestplotbetasplotcorplotdeltaplothistplotweightsplotwinpvaluerandwinsinglewinslidingwinweightwinwgdevwgmean

Dependencies:bootclicolorspacecpp11evdfansifarvergenericsggplot2gluegridExtragtableinsightisobandlabelinglatticelifecyclelme4lubridatemagrittrMASSMatrixmgcvminqaMuMInmunsellnlmenloptrnumDerivpillarpkgconfigplyrR6RColorBrewerRcppRcppEigenRcppRollreshaperlangscalestibbletimechangeutf8vctrsviridisLitewithr

Advanced climwin

Liam D. Bailey and Martijn van de Pol

Rendered fromadvanced_climwin.Rmdusingknitr::rmarkdownon Aug 26 2024.

Last update: 2020-05-25
Started: 2016-03-07

climwin

Liam D. Bailey and Martijn van de Pol

Rendered fromclimwin.Rmdusingknitr::rmarkdownon Aug 26 2024.

Last update: 2020-05-20
Started: 2015-07-17

Readme and manuals

Help Manual

Help pageTopics
Test for auto-correlation in climate.autowin
Annual laying date of breeding common chaffinch (Fringilla coelebs).Chaff
Daily climate data from 1965 to 2012.ChaffClim
Test the correlation between two climate variables.crosswin
Visualise the weight distribution for given parameter valuesexplore
Chick body mass data since 1979.Mass
Daily climate data since 1979.MassClimate
Example output dataframe from function slidingwin.MassOutput
Example output dataframe from function randwin.MassRand
Determine the median start and end time for climate windowsmedwin
Merge two slidingwin analyses.merge_results
Monthly temperature dataMonthly_data
Reproductive success of birds since 2009.Offspring
Daily climate data since 2009.OffspringClimate
Visualise climate window dataplotall
Visualise the best climate windowplotbest
Plot model beta estimatesplotbetas
Visualise climate cross correlation or autocorrelation.plotcor
Plot deltaAICc of modelsplotdelta
Create a histogram of randomised deltaAICc valuesplothist
Plot distribution of model weightsplotweights
Plot the start and end time of best climate windowsplotwin
Determine the probability that a given climate signal is 'true'.pvalue
Climate window analysis for randomised datarandwin
Fit a single climate windowsinglewin
Average size of red winged fairy wren (Malurus elegans) chicks.Size
Daily climate data from 2006 to 2015.SizeClimate
Test for a climate windows in data.slidingwin
Find a weighted climate windowweightwin
Calculate within group deviance.wgdev
Calculate within group means.wgmean