Package: climwin 1.2.33

climwin: Climate Window Analysis

Contains functions to detect and visualise periods of climate sensitivity (climate windows) for a given biological response. Please see van de Pol et al. (2016) <doi:10.1111/2041-210X.12590> and Bailey and van de Pol (2016) <doi:10.1371/journal.pone.0167980> for details.

Authors:Liam D. Bailey [aut, cre], Martijn van de Pol [aut]

climwin_1.2.33.tar.gz
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climwin_1.2.33.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
climwin/json (API)

# Install 'climwin' in R:
install.packages('climwin', repos = c('https://liamdbailey.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/liamdbailey/climwin/issues

Datasets:
  • Chaff - Annual laying date of breeding common chaffinch (Fringilla coelebs).
  • ChaffClim - Daily climate data from 1965 to 2012.
  • Mass - Chick body mass data since 1979.
  • MassClimate - Daily climate data since 1979.
  • MassOutput - Example output dataframe from function slidingwin.
  • MassRand - Example output dataframe from function randwin.
  • Monthly_data - Monthly temperature data
  • Offspring - Reproductive success of birds since 2009.
  • OffspringClimate - Daily climate data since 2009.
  • Size - Average size of red winged fairy wren (Malurus elegans) chicks.
  • SizeClimate - Daily climate data from 2006 to 2015.

On CRAN:

Conda:

8.01 score 14 stars 152 scripts 448 downloads 8 mentions 20 exports 41 dependencies

Last updated from:661aae9961. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK212
source / vignettesOK222
linux-release-x86_64OK245
macos-release-arm64OK274
macos-oldrel-arm64OK279
windows-develOK247
windows-releaseOK225
windows-oldrelOK236
wasm-releaseOK157

Exports:autowincrosswinexploremedwinmerge_resultsplotallplotbestplotbetasplotcorplotdeltaplothistplotweightsplotwinpvaluerandwinsinglewinslidingwinweightwinwgdevwgmean

Dependencies:bootclicpp11evdfarvergenericsggplot2gluegridExtragtableinsightisobandlabelinglatticelifecyclelme4lubridateMASSMatrixminqaMuMInnlmenloptrnumDerivplyrR6rbibutilsRColorBrewerRcppRcppEigenRcppRollRdpackreformulasreshaperlangS7scalestimechangevctrsviridisLitewithr

Advanced climwin
More complex baseline models | Adding interactions with climate | Mixed effects models | Climate thresholds | A worked example | Biological measurements grouped across two years | Spatial replication | weightwin function | Pros and cons
Rendered fromadvanced_climwin.Rmdusingknitr::rmarkdown

Last update: 2025-06-01
Started: 2016-03-07

climwin
Why do we need climwin? | slidingwin: The base function | Under the hood | Getting started | The finished product | Accounting for over-fitting | randwin | pvalue | Visualising our data | Plot $\Delta AICc$ values | Plot model weights | Plot model coefficients | Median window | Best model plot | The plotall function | Testing multiple parameter combinations
Rendered fromclimwin.Rmdusingknitr::rmarkdown

Last update: 2025-06-01
Started: 2015-07-17

Readme and manuals

Help Manual

Help pageTopics
Test for auto-correlation in climate.autowin
Annual laying date of breeding common chaffinch (Fringilla coelebs).Chaff
Daily climate data from 1965 to 2012.ChaffClim
Test the correlation between two climate variables.crosswin
Visualise the weight distribution for given parameter valuesexplore
Chick body mass data since 1979.Mass
Daily climate data since 1979.MassClimate
Example output dataframe from function slidingwin.MassOutput
Example output dataframe from function randwin.MassRand
Determine the median start and end time for climate windowsmedwin
Merge two slidingwin analyses.merge_results
Monthly temperature dataMonthly_data
Reproductive success of birds since 2009.Offspring
Daily climate data since 2009.OffspringClimate
Visualise climate window dataplotall
Visualise the best climate windowplotbest
Plot model beta estimatesplotbetas
Visualise climate cross correlation or autocorrelation.plotcor
Plot deltaAICc of modelsplotdelta
Create a histogram of randomised deltaAICc valuesplothist
Plot distribution of model weightsplotweights
Plot the start and end time of best climate windowsplotwin
Determine the probability that a given climate signal is 'true'.pvalue
Climate window analysis for randomised datarandwin
Fit a single climate windowsinglewin
Average size of red winged fairy wren (Malurus elegans) chicks.Size
Daily climate data from 2006 to 2015.SizeClimate
Test for a climate windows in data.slidingwin
Find a weighted climate windowweightwin
Calculate within group deviance.wgdev
Calculate within group means.wgmean